Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs73036063 | chr11:133828758 | G/A | 3.62E-8 | 483 | 16.07 | 15.33 | 14.93 | KM Plot |
| THCA | rs73036064 | chr11:133829442 | G/A | 4.35E-8 | 485 | 16.13 | 15.27 | 14.93 | KM Plot |
| THCA | rs73036065 | chr11:133830067 | G/T | 4.25E-8 | 483 | 16.02 | 15.32 | 14.93 | KM Plot |
| THCA | rs73036081 | chr11:133840156 | C/T | 7.72E-5 | 489 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs73036086 | chr11:133841782 | C/T | 0.00014 | 488 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs73036087 | chr11:133842361 | G/A | 0.00014 | 488 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs73043383 | chr2:201968246 | C/T | 0.00017 | 480 | 16.02 | 15.77 | 5.07 | KM Plot |
| THCA | rs73045343 | chr2:202017408 | G/A | 0.000284 | 487 | 16.23 | 15.7 | 5.1 | KM Plot |
| THCA | rs73053551 | chr1:184079509 | C/T | 2.34E-6 | 481 | 15.63 | 17.58 | 25.93 | KM Plot |
| THCA | rs73059115 | chr2:201730590 | C/G | 0 | 481 | 16.4 | 15 | 2.47 | KM Plot |
| THCA | rs7307680 | chr12:1052488 | A/G | 0.000107 | 472 | 16.37 | 15.7 | 9.32 | KM Plot |
| THCA | rs7307927 | chr12:109496794 | A/G | 3.36E-6 | 490 | 12.35 | 16.37 | 15.83 | KM Plot |
| THCA | rs73095309 | chr7:33154958 | A/G | 2.28E-11 | 477 | 14.9 | 17.75 | 15.62 | KM Plot |
| THCA | rs73099168 | chr1:219554539 | A/G | 3.49E-5 | 490 | 15.27 | 19.42 | 12.78 | KM Plot |
| THCA | rs73101412 | chr1:219577371 | C/T | 0.000164 | 483 | 15.17 | 19.9 | 12.47 | KM Plot |